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Updated Practical 3 Processing 16S rRNA amplicon data (markdown) authored by Ben Francis's avatar Ben Francis
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Practical-3-Processing-16S-rRNA-amplicon-data.md
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...@@ -114,9 +114,10 @@ Start by getting the full processed dada data: ...@@ -114,9 +114,10 @@ Start by getting the full processed dada data:
$ cp /bioinf/home/tfrancis/marmic2021/demultiplexed/seqtab_final.rds . $ cp /bioinf/home/tfrancis/marmic2021/demultiplexed/seqtab_final.rds .
$ cp /bioinf/home/tfrancis/marmic2021/demultiplexed/taxa_final.rds . $ cp /bioinf/home/tfrancis/marmic2021/demultiplexed/taxa_final.rds .
Then R Then get R with conda:
$ R $ conda install -c r r
$ conda install -c r r-essentials
load the data: load the data:
... ...
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