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Update Practical 3 Processing 16S rRNA amplicon data authored by Taylor Priest's avatar Taylor Priest
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Practical-3-Processing-16S-rRNA-amplicon-data.md
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...@@ -181,7 +181,7 @@ Make some basic diversity plots and rarefaction curves ...@@ -181,7 +181,7 @@ Make some basic diversity plots and rarefaction curves
Now let's visualise the composition of our sample communities using basic barplots. For this, we first need to calculate relative abundance Now let's visualise the composition of our sample communities using basic barplots. For this, we first need to calculate relative abundance
physeq_herschel_rel <- transform_sample_counts(physeq_herschel, function(otu) otu/sum(out)) physeq_herschel_rel <- transform_sample_counts(physeq_herschel, function(otu) otu/sum(otu))
physeq_herschel_rel physeq_herschel_rel
First let's plot phylum-level composition First let's plot phylum-level composition
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