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Updated Practical 3 Processing 16S rRNA amplicon data (markdown)
authored
Jan 27, 2020
by
Ben Francis
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Practical-3-Processing-16S-rRNA-amplicon-data.md
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Before we begin, there's one thing we need to download, which is the formatted silva database used by DADA2 to assign taxonomy.
$ cd /bioinf/home/your_username/day_1/demultiplexed
$ cd /bioinf/home/your_username/
marmic_NGS2020/
day_1/demultiplexed
$ wget https://zenodo.org/record/1172783/files/silva_nr_v132_train_set.fa.gz
### 3.1 Processing our data with DADA2
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