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Updated Practical 3 Processing 16S rRNA amplicon data (markdown)
authored
Jan 13, 2021
by
Ben Francis
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Practical-3-Processing-16S-rRNA-amplicon-data.md
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@@ -36,7 +36,7 @@ Now we have our file names, we can look at the quality values of the reads. Like
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@@ -36,7 +36,7 @@ Now we have our file names, we can look at the quality values of the reads. Like
> plotQualityProfile(fnFs[1:2])
> plotQualityProfile(fnFs[1:2])
> dev.off()
> dev.off()
To view the plot, open a new terminal
*but don't close R, since we still need it to finish the analysis*
and run:
To view the plot, open a new terminal
*
*but don't close R, since we still need it to finish the analysis*
*
and run:
# Don't forget to add the path to this file!
# Don't forget to add the path to this file!
$ atril QualityPlot.pdf
$ atril QualityPlot.pdf
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