Practical-6-MAG-analyses.md

@@ -101,9 +101,9 @@ Now we need to submit the script to Slurm with:
     $ sbatch slurm-submit.sh
 
 
-Now you can run `squeue` and see if your job is running!
+Now you can run `squeue` and see if your job is running! Also you'll see a new file has been created for the output that would otherwise print to screen. Check this file to make sure you don't have any errors. Run time for GTDB-tk is pretty long (after all it has to compare your MAGs to a database of over 20,000 other genomes), so carry on with the stuff below while you wait.
 
-It's possible to load the tree output into arb, but it's a bit of a faff. We prepared an example of what it looks like for you to explore. There's an arb tree you can view (you first have to go to an arb server `$ ssh arb-X` (put in an number from 1 to 3 in place of the X), then run `arb` from the command line). 
+It's also possible to load the phylogenetic tree output from GTDB-tk into arb, but it's a bit of a faff. We prepared an example of what it looks like for you to explore. There's an arb tree you can view (you first have to go to an arb server `$ ssh arb-X` (put in an number from 1 to 3 in place of the X), then run `arb` from the command line). 
 
 ## ANI and AAI