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Updated Practical 6 MAG analyses (markdown) authored by Luis H Orellana (Coto)'s avatar Luis H Orellana (Coto)
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Practical-6-MAG-analyses.md
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...@@ -123,11 +123,11 @@ For checking relatedness among genomes/MAGs, we will perform pairwise average nu ...@@ -123,11 +123,11 @@ For checking relatedness among genomes/MAGs, we will perform pairwise average nu
Compare AAI values among MAGs by running the aai.rb script: Compare AAI values among MAGs by running the aai.rb script:
``` ```
$ ~/marmic_NGS2019/software/aai.rb -1 {Predicted protein sequences for genome 1} -2 {Predicted protein sequences for genomes 2} $ Software/aai.rb -1 {Predicted protein sequences for genome 1} -2 {Predicted protein sequences for genomes 2}
``` ```
For ANI calculations, we can just run the ani.rb script using the genomic sequences (i.e., don’t need to predict genes) For ANI calculations, we can just run the ani.rb script using the genomic sequences (i.e., don’t need to predict genes)
``` ```
$ ~/marmic_NGS2019/software/ani.rb -1 {Genome 1} -2 {Genomes 2} $ Software/ani.rb -1 {Genome 1} -2 {Genomes 2}
``` ```
Feel free to explore other options available in the ani.rb and aai.rb script.<br> Feel free to explore other options available in the ani.rb and aai.rb script.<br>
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