... | @@ -115,7 +115,7 @@ For this section, we are just going to explore the results for a collection of M |
... | @@ -115,7 +115,7 @@ For this section, we are just going to explore the results for a collection of M |
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4. Download the reference package either manually or by running `download-db.sh`.
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4. Download the reference package either manually or by running `download-db.sh`.
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5. Set the `GTDBTK_DATA_PATH` environment variable in `{gtdbtk environment path}/etc/conda/activate.d/gtdbtk.sh` to the reference package location.<br>
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5. Set the `GTDBTK_DATA_PATH` environment variable in `{gtdbtk environment path}/etc/conda/activate.d/gtdbtk.sh` to the reference package location.<br>
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Explore the results of GTDB-tk in today's folder. How do these results compare to checkM estimations?
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Explore the results of GTDB-tk in today's folder. There's an arb tree you can view (you first have to go to an arb server `$ ssh arb`, then run `arb` from the command line). How do these results compare to checkM estimations?
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## ANI and AAI
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## ANI and AAI
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