Skip to content

Changes

Page history
Updated Practical 6 MAG analyses (markdown) authored by Ben Francis's avatar Ben Francis
Show whitespace changes
Inline Side-by-side
Practical-6-MAG-analyses.md
View page @ 6da8dffc
...@@ -97,7 +97,7 @@ Then copy and paste the following into it, and change the path to your MAGs, and ...@@ -97,7 +97,7 @@ Then copy and paste the following into it, and change the path to your MAGs, and
#SBATCH --partition=CLUSTER # Partition #SBATCH --partition=CLUSTER # Partition
gtdbtk classify_wf --cpus 16 --genome_dir /path/to/MAGs/ --out_dir gtdbtk_classify -x fa gtdbtk classify_wf --cpus 16 --genome_dir /path/to/MAGs/ --out_dir gtdbtk_classify -x fa
gtdbtk de_novo_wf --cpus 16 --genome_dir /path/to/MAGs/ --out_dir gtdbtk_denovo -x fa --bac120_ms --outgroup_taxon p__Deinococcota gtdbtk de_novo_wf --cpus 16 --genome_dir /path/to/MAGs/ --out_dir gtdbtk_denovo -x fa --bacteria --outgroup_taxon p__Deinococcota
``` ```
Now we need to submit the script to Slurm with: Now we need to submit the script to Slurm with:
......