| ... | ... | @@ -19,7 +19,7 @@ $ conda install -c bioconda checkm-genome |
|
|
|
If everything went well you should be able to run checkM on your generated bins using a command like the one below. Please select no more than 20 MAGs so you don't have to wait forever.
|
|
|
|
|
|
|
|
```
|
|
|
|
$ checkm lineage_wf -f checkM_MaxBin_output_all/checkm_MaxBin.txt --tab_table -x fasta -t 10 --pplacer_threads 10 <folder with bins> <output location>
|
|
|
|
$ checkm lineage_wf -f checkm_MaxBin.txt --tab_table -x fasta -t 10 --pplacer_threads 10 <folder with bins> <output location>
|
|
|
|
```
|
|
|
|
If things went well after a couple of minutes (~15 minutes) you should be able to start analyzing the MAGs you generated.<br>
|
|
|
|
|
| ... | ... | |
