... | @@ -66,7 +66,7 @@ This is just FYI. Don't bother to run GTDB-tk because it requires too much compu |
... | @@ -66,7 +66,7 @@ This is just FYI. Don't bother to run GTDB-tk because it requires too much compu |
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4. Download the reference package either manually or by running `download-db.sh`.
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4. Download the reference package either manually or by running `download-db.sh`.
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5. Set the `GTDBTK_DATA_PATH` environment variable in `{gtdbtk environment path}/etc/conda/activate.d/gtdbtk.sh` to the reference package location.<br>
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5. Set the `GTDBTK_DATA_PATH` environment variable in `{gtdbtk environment path}/etc/conda/activate.d/gtdbtk.sh` to the reference package location.<br>
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Explore the results of GTDB-tk in today's folder. There's an arb tree you can view (you first have to go to an arb server `$ ssh arb-X` (put in an number from 1 to 3 in place of the X), then run `arb` from the command line). How do these results compare to checkM estimations?
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**Explore the results of GTDB-tk in today's folder.** There's an arb tree you can view (you first have to go to an arb server `$ ssh arb-X` (put in an number from 1 to 3 in place of the X), then run `arb` from the command line). How do these results compare to checkM estimations?
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## ANI and AAI
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## ANI and AAI
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