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Updated Practical 6 MAG analyses (markdown) authored by Ben Francis's avatar Ben Francis
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Practical-6-MAG-analyses.md
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......@@ -58,7 +58,7 @@ Can you figure out how to run it? Once you have your protein translations you ar
## GTDB-tk
For this section, we are just going to explore the results for a collection of MAGs previously selected by us. The installation is not hard but it requires too much free space to run. Alternatively, you could also run it using Kbase. However, feel free to install it using conda (these are the instructions from https://github.com/Ecogenomics/GTDBTk).<br>
This is just FYI. Don't bother to run GTDB-tk because it requires too much compute resources! For this section, we are just going to explore the results for a collection of MAGs previously selected by us. The installation is not hard but it requires too much free space to run. Alternatively, you could also run it using Kbase. However, feel free to install it using conda (these are the instructions from https://github.com/Ecogenomics/GTDBTk).<br>
1. Create a new conda environment: `conda create -n gtdbtk`
2. Activate the environment: `conda activate gtdbtk`
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